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The field should contain the following information
embryo production (mating, superovulation & mating, IVF)
Email from LN: March 3, 2021 at 2:05 PM
Hi All,
I thought we had agreed to capture the v…
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Hey, I am trying to do allele-specific expression analysis (ASE) for a few RNA seq samples ( 32 disease and 5 normal samples, unpaired unrelated). Could you suggest a pipeline/method to convert the ma…
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Hello,
In large cohorts (~100K) multi-allelic sites are very common. Furthermore, good rare alleles can share the locus of bad, "common" variants (they are common since they seem to appear in many in…
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By screening though the code of the read_vcf() function of Fred2.IO.FIleReader I noticed the following:
_l194:_ v_list = record.ALT with record an item of vl being a Record object from pyvcf pa…
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There's no documentation I can find about how kallisto handles mismatches to the reference transcriptome. Is there any way to set a maximum value or to quantify the mismatches, such as for the purpose…
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Hi, I have a question about how reads are assigned as conflicting, unassignable etc.
I've been trying to use SNPsplit on noisy PacBio long reads to help with haplotype-resolved assembly (which I kn…
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We should document variants in certain genes that shouldn't be set to reference (if missing, as opposed to actually reference):
* CYP3A5
* CYP2C19
* UGT1A1
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> By the way, allele_specific_modification.py does something very similar to differential_modification.py, only focussing on a simpler case of a 1 vs 1 comparison. The same improvements can probably b…
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**Is your feature request related to a problem in the current program to new available techology or software? Please describe and add links/citations if appropriate.**
Would it be possible to view th…
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Hi!
Thank you for providing this tool.
I encountered a minor issue while using GLnexus and would like to seek your guidance.
Initially, I used GLnexus to merge five datasets, each consisting …