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Hi,
I'm trying to run the CHT pipeline. When I run the bam2h5.py script, I have the following message: "WARNING skipping read: handling of partially mapped reads not implemented". After looking at t…
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Hi,
I am interested in identifying significant eQTLs given _n_ phased SNPs and _m_ genes with allele-specific reads.
I studied the `get_target_regions` script, which doesn't have the option of s…
ghost updated
4 years ago
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See issue RTXteam/RTX#1300
Example text:
```
match (n {id: 'UniProtKB:P05177'}) return n.description
```
produces:
"-!- FUNCTION: A cytochrome P450 monooxygenase involved in the metabolis…
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I am paraphrasing an e-mail that I received (and providing this link as a response).
If the sender is OK with it, then I will upload more specific / complete information about question.
Basicall…
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This is from DeepVariant's documentation.
"For somatic data or any other samples where the genotypes go beyond two copies of DNA, DeepVariant will not work out of the box because the only genotypes…
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Some questions
* Will FACS sorting disturb RNA?
* How should we preserve the cells post-sorting and pre-RNA isolation?
* How should we isolate RNA?
* What markers should we sort on?
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- [ ] TopMed
- [ ] MODs
- [ ] GTex
Please write up draft descriptions of ways that others misinterpret or mis-parse your data; please do so in a way that empowers the commons team to avoid such i…
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Hi,
I used the following command:
` mentalist download_cgmlst -o lm_cgmlst_fasta -s 690488 -k 31 --db lm_cgmlst.db
`
to try and download the L. mono cgmlst and but got (in addition to a load of w…
ELPhD updated
5 years ago
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In the subsection of `03_categorize.md` for #297 this came up. I think we need a bit more discussion around the topic to sufficiently resolve this. In the interests of time, I'm creating this issue fo…
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Hello,
I'm having trouble getting dropulation in Drop-seq v3.0.0 and v3.0.1 to work. For v3.0.0 I receive the errors when I try to run:
```
AssignCellsToSamples: 40: Syntax error: "(" unexpecte…