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I just encountered the error written in the title.
`InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform`
I have installed AF in several c…
ocstx updated
3 weeks ago
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RCE-933
https://www.alphafold.ebi.ac.uk/
We've had a number of requests for this to be installed centrally on the clusters.
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Need to fix citation 39 below.
The proliferation of web-based resources transformed access to bioinformatics tools, democratizing their availability and usability for researchers worldwide. Throug…
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I have alphafold 2.3.2 installed and running using: python3 alphafold/docker/run_docker.py ...
but I can't figure out how to run TCRdock's run_prediction.py "in the alphafold docker instance"
…
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Hello,
This was a great addition to streamlit!
I was able to incorporate molstar into my streamlit application before by just creating a st.component and using the JS plugin example provided b…
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Got the following error while running the same settings I've been running for multimers.
```
Randomizing MSAs
2024-06-10 05:24:29.724823: E external/org_tensorflow/tensorflow/compiler/xla/pjrt/pjr…
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Thanks for this great work.
I need to convert all alphafold models to unifold format, but I'm confused by the model names.
Could you provide a full script for converting all alphafold models (incl…
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Hello,
The script that prepares the data for prediction, setup_for_alphafold.py, is long when you have a lot of data. I've noticed that it's not parallelized, is it possible to speed it up ?
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Hi,
while executing the colab notebook following error is coming
ImportError: cannot import name 'SCOPData' from 'Bio.Data' (/usr/local/lib/python3.10/dist-packages/Bio/Data/__init__.py)
could …
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Dear AlphaFold users and/or developers,
I'm struggling to find the root cause of two error messages
"File "/home/rloureiro/alphafold/alphafold-env/lib/python3.10/site-packages/urllib3/connectionp…