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It may be worth trying [miniprot](https://github.com/lh3/miniprot) for spliced alignments as an alternative path for generating these exon support results.
Though in my tests I found it didn't alwa…
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Hi,
I read a paper about COMPAS in detecting alternative splicing with SRRM4 activation. Then I am trying to use this package to analysis my data. But I was having trouble to install it. Here is m…
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Hi,
Thank you for developing TEQUILA-seq !
I have encountered some problems when I use Find_AS_Events.py to define alternative splicing events.
Here is my code:
`python ${TEQUILA_Dir}/Find_AS_Even…
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I'm trying to use STAR to align RNA-seq data to HPV16 genome. My main goal is to analyze alternative splicing. Because HPV16.gtf only contains CDS not exon, I change all CDS into exon. However, there …
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Dear,
We succesfully implemented CTAT-splicing in our STAR-fusion pipeline.
**1) we pick up all our relevant fusion genes using STARfusion**
**2) we correctly picked up METx14del,** without fal…
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Some people might be more willing to try out splicing if they know it can only destroy one specific (small) channel. So it'd be nice to have a way to specify that in the config.
Sjors updated
9 months ago
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### Is there an existing issue for this feature request?
- [X] I have searched the existing issues
### Is your feature request related to a problem?
When printing objects that have large flat areas…
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Currently we compare peptide sequences against a reference proteome from Ensembl.
It would be more correct to create a proteome that incorporated SNPs that impact protein sequence and then look f…
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This recent paper provides an overview of pipelines that can be used differential splicing analysis:
https://www.biorxiv.org/content/early/2017/06/30/156752
Figure 1 shows an overview of differ…