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Hello Robert!
I'm having a lot of fun with this pipeline. Right now I'm trying to have bactopia output the mapping files (.bam) too.
Thusfar, I hadn't really needed it but I'm trying out a few ne…
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Hi there,
I just re-ran a subset of my data through METABOLIC-C. The last time I ran the program, I pointed the call to the entire list of transcriptome bams and I received molecular weight scores p…
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Hi there,
I am aiming to make plots with coverage data for several bam files. I get .depth files and .csv files (as well as ORF_calls and HMM_results. However, there are no plots. Here is my input a…
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Posting here in case others have solutions.
TL;DR Install works under python 3.8
### Details
* MacOS 11.5 (M1 chip)
* Python version 3.9.12 (installed via conda)
* Pip 22.0.4
```
pip cach…
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Hello,
I have encountered a BrokenPipeError [Errno 32] near the end of "anvi-pan-genome". I have been using a docker version of ANVIO (pulled the latest version) on MacPro 2019 8-Core Intel Xeon W …
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## Short description of the problem
I'm trying to include Eggnog mapper in an Anvio workflow, but it stops with a non descriptive error. No clue if it's an issue with my workflow of with my install…
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Hi, I am using version 1.3.1 of metawrap with the module of bin_refinement. I got the "BIN_REFINEMENT PIPELINE FINISHED SUCCESSFULLY!". Everything seems to be fine. However in the output, I noticed th…
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Hi, I'm trying to install das_tool inside a conda env for anvio 7.1, and I'm getting this incompatibility error. Is there any way I can solve this?
I'm using conda-4.11.0 and python 3.6.10
```
…
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So we recently decided to change the collection of SCGs in anvi'o that are used to infer taxonomy of genomes rapidly. The SCG data are coming from the GTDB, and the purpose and the utility of this fun…
meren updated
2 months ago
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## Running anvi-split but cannot proceed because PROFILE-refined.db does not seem to have a table named `variability_splits
## anvi'o version
Anvi'o .......................................: mari…