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yep, we need that, hope that medium will also work
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Some metanetx reaction or metabolite identifiers keep being depreciated. How do I update metanetx_universal_model_bigg_rhea_kegg_brenda accordingly ?
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Many models in BiGG are currently annotated with a taxonomic identifier and a reference to the model itself, for example, as shown below.
```xml
…
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See https://github.com/draeger-lab/ModelPolisher/issues/106 for more details.
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Thank you for developing smetana!
I just have a general question. I'm currently building models with carveme by using the default command (`carve genome.faa`) without
specifying any media via `--gap…
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- [ ] RHEA
- [ ] SEED
- [ ] BiGG
~- [ ] remove PR# (can be inferred from git blame)~
check for both mets and rxns
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The BiGG Recon3D model has
Metabolites | 5835
Reactions | 10600
Genes | 2248
whereas the paper reported:
> 3,288 open reading frames (representing 17% of functionally annotated human genes)…
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Notes that will come in handy when trying to use MATLAB, Colab, etc. when pertaining to FBAs and GEMs
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Dear Author,
I hope this message finds you well.
Firstly, I would like to extend my sincere compliments on your remarkable work. It has greatly assisted us in our research endeavors. However, …
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```python
def normal_flow(self, x, y_onehot):
pixels = thops.pixels(x)
z = x + torch.normal(mean=torch.zeros_like(x),
std=torch.ones_like(x) * (1. …