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Hi,
I'm having an error with KtServerService when running cactus on a dataset with 7 genomes. I was able to run cactus on 2 genomes without encountering this issue. Here are some parts of the logs …
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( Note: I'm trying the NON-legacy binary on different machine than I was using for issue #762 )
I'm attempting to run the v2.2.0 pre-compiled binaries (cactus-bin-v2.2.0.tar.gz). I'm running a very…
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### Describe the Bug
When I open a .sldy file that is very large with bioio I can't get any information about it without my memory being maxed out, including the shape, dimensions, or calling .get_…
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### Describe the Bug
I try to use bioio to read image data in a parallelized loop. It works if the file is on a local network but fails (just hangs and stops without throwing an error) if the f…
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I would like to add napari-aicsimageio and bioio-czi, for example, as _optional_ dependencies to napari-ndev. As part of this task, I would also like to move other optional plugins, (like napari-pycle…
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Recent teaching experiences showed that handling such "monster activities" (https://neubias.github.io/training-resources/image_file_formats/index.html#open) can be challenging for trainers, students a…
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Hello Cactus Community!
We're running into a problem that some others have also reported (#49, #95, #97). We have three jobs that have failed, been reattempted (twice each), and eventually landed …
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Hi,
I am seeing many jobs associated with the TrimAndRecurseOnOutgroups step failing due to lack of memory. I am using Slurm and toil v 3.19.
```
INFO:toil.leader:Issued job 'TrimAndRecurse…
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When running the `md5sum.cwl` workflow using Toil, the job seems to hang indefinitely in "RUNNING" state. Looking at the run log, the workflow appears to have completed successfully, but the exit code…
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Hello,
The dependency solver seems to go on an infinite loop when trying to add `ome-zarr` to a poetry project.
Can be reproduced even with just ome-zarr as the only dependency:
```
alik@AFI…