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Chris Mungall and I have been talking about getting a current MIxS into BioPortal and keeping it up to date. That could just be a matter of pointing their ingester at a reliable location for the MIxS …
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Allow the user to describe which ontologies to search (when building templates) in their user profile.
(Note: Similar ideas referenced in https://github.com/metadatacenter/cedar-template-editor/iss…
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This is a general remark about the behavior of BioPortal when generating mapping automatically.
When an ontology reuse the URI of a class inside another ontology, then a SAME_URI mapping is detect…
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We have many nodes assigned `biolink:NamedThing` category by default, but these could be assigned other categories if a mapping is available, e.g. UMLS semantic types.
See API call: https://data.bi…
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The most recent KG-Bioportal build (20220511) contains transforms of nearly all Bioportal ontologies (excepting 19, see below).
We'll need some initial validation + manual curation to find potential …
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Related to https://github.com/ontoportal/ontoportal-project/issues/7
### Goal
Run an ontoportal instance using docker
### Requirments
- [x] Have a CI to build the API docker image on each r…
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## Summary
A UI is **not a deliverable** of the CompLOINC project, but it could be nice to have a demo.
## Options
### Import into existing tools
a. Bioportal, OLS, etc (if we need read only)
b…
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The W3 provides a mechanism for providing permanent identifiers. This is something that we should be using for RADx but we need to research this a bit more. See [the w3id site](https://w3id.org) for…
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The RADx Metadata Template uses the Generic Dataset Metadata Vocabulary for various fields however, IRIs in this vocabulary are not being resolved because the server that hosted descriptions for IRIs …
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As a follow-up to #569, it's the case that several ontologies in the OLS don't use OBO PURLs, which means the automated code for constructing OLS (and BioPortal) URIs is broken.
E.g., for KISAO, th…