-
Thank you for the great tool! I ran run_dbcan using metagenomic sequencing data from fecal samples. For each sample, I provided the script with a file containing the assembled contigs (>500bp) and I e…
-
Hi,
I have run dbCAN on all of the bacterial genomes for one specific genus and would like to make a reference database of all the CAZymes in this genus to use as a reference for short metagenomic …
-
Hi,
Thanks for developing such a great pipeline. Could you provide more explanations about the output files?
I got the following results:
cgc.gff
cgc.out
diamond.out
hmmer.out
Hotpep.out
overv…
-
Dear Jon,
I have download the latest release.
while run "funannotate compare -i compare/ --cpus 64"
funannotate/compare.py", line 1037, in main
stats[i].append("{0:,}".format(singlet…
-
Hi Jon,
Hope you are doing good.
We ran funannotate compare and were not able to generate COG annotations in the report. So I went through the Eggnog annotations which was generated using Eggnog…
-
Hi dbcan dev,
I really appreciate your effort making this tool open source for the community.
Actually, we have 150*2 paired end shotgun sequenced data and we think assembling more than 500+ sa…
-
Hi,
I am running in the latest docker version of funannotate. I have ran annotate module somedays back without any error. I have pulled a latest docker version after one of your fix. Now when I try…
-
Dear Jon,
Thank for the latest release of **funannotate**. I tried it on _Linum usitatissimum_ genome and almost everything went fine. However, InterProScan search is still running for 10+ days and…
-
Hi Thanks for the nice tool! When dealing with many genomes, e..g 300, the produced METABOLIC_result.xlsx cannot be opened, saying this file is corrupt and cannot be opened. For dealing with 2 or 3 ge…
-
Hi,
first of all thank you for SACCHARIS, it really makes it easier to characterize CAZymes.
I have been using it quite a bit lately and for most families Saccharis runs fine. Now I have come acro…
reslp updated
4 years ago