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Hi! I am using TERRACE, which works great with STAR aligned reads. In my STAR command, I have chimeric mapping enabled, which I suspect helps TERRACE detect circRNAs. I used the same reads to align us…
rsalz updated
7 months ago
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High confidence if a BSJ is:
- detected by circExplorer and
- detected by circExplorer_bwa and
- one other tool.
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Hi,
I have a question regarding predicting circRNAs using multiple tools (CIRI2, find_circ, DCC, etc.) using CIRIquant.
How am I supposed to do that using CIRIquant `--circ` and `--tool` options? I…
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note that TopHat has entered a low maintenance, low support stage , so does the circexplorer2 support hisat2 ?
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### Description of feature
Categorization of the workflow at the process level with the corresponding modules needed to port to 'DSL2'. Once the modules have been created, I can place more shape on…
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Hi GO,
I would need a term for the formation of circular RNAs.
Thanks
Sylvain
Name: Formation of circular RNA
Biological Process
Definition: Formation of circular RNAs (circRNAs) by back-s…
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Hi all,
Thanks so much for generating this useful pipeline!
I wanted to find circrnas in a different way, and I found your work. But when I use it, I encounter the following problems:
**Here is…
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Hello!
I am having troubles installing isoCirc on the cluster without sudo access. The cluster system administrator tried to install it as well, but faced similar problems (both with pip install is…
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[circRNA_finder](https://github.com/orzechoj/circRNA_finder) has 2 steps (perl scripts):
* `./runStar.pl`: align with STAR
* `./postProcessStarAlignment.pl`: process STAR output folder to generate…
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Hi! Thanks for developing this package and answering questions in general.
I make my way to mRG step and when following the example, I wasn't able to figure out where `rmsk.bed.gz` is from?