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Sella is using finite difference method to generate initial Hessian for TS search (dimer likely), which is using a relatively small stepsize `eta=1e-4`, but this is not suitable for ABACUS and any oth…
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# General Notes
This repository serves as a mostly automated p…
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Hey,
trying to use your tool. I succeeded the first part, although I as well had to had an artificial "NM_" to my annotation file.
No I want to run the differential analysis using two replicat…
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Dear Siamcat team,
may I know how to do differential taxonomic analysis using longitudinal model and siamcat?
For example, data show below:
| id | group | time point |
|---|---|---|
|a | norm…
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https://github.com/galaxyproject/training-material/blob/main/topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.md
Hi all -- The workflow in this tutorial doesn't play well w…
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Hello, I believe that I am experiencing an issue with my GTF formatting, however I am unable to pinpoint the issue.
The log of the error is below:
```
executor > slurm (189)
[4f/9326cf] proce…
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Dear @Vivianstats ,
Could you kindly explain briefly how scLink can be used to perform differential co-expression analysis between case and control samples similar to what you performed using the brea…
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Is there an entry for Electrospray-differential mobility analysis ES-DMA ?
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Dear Yu,
Thanks for the development of this wonderful package, which can help me a lot with the microbiome data analysis. It came an error showed that "Error in get_call(obj, "classgroup") : 缺…
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Hi,
The program successfully predicts the fusion gene in the ceil line but I would like to do some downstream analysis to compare the expression for this fusion gene between samples.
Are those ju…