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zellerlab
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siamcat
R package for Statistical Inference of Associations between Microbial Communities And host phenoType
https://siamcat.embl.de/
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integrate biomass into siamcat
#46
tapj
closed
4 months ago
2
Question: Differential taxonomic analysis using longitudinal model and siamcat
#45
alienzj
opened
5 months ago
2
Can the function "normalize.features" be applied to normalize only one single test sample?
#44
liaoherui
closed
11 months ago
12
How do you determine which features are the top one?
#43
fernando-aq
closed
11 months ago
3
Error in train.model() while running randomforest and enet
#42
wasifmohdkhan
closed
11 months ago
1
How top do you pick 20 features in association.plot() function?
#41
fernando-aq
closed
1 year ago
1
finetuning the association and model evaluation plot
#40
mcfmulders
opened
1 year ago
1
Error in self$assert(xs) when running train.model()
#39
DrYoungOG
closed
11 months ago
1
SIAMCAT v2.2.0 model.interpretation.plot is not working
#38
Ales-ibt
closed
11 months ago
2
check.associations error from working with phyloseq file
#37
Hesham999666
closed
11 months ago
2
variables with more 2 states
#36
drelo
opened
2 years ago
0
Help filtering df.weights during meta-analysis routine
#35
drelo
closed
1 year ago
0
How to pass large output like HUMAnN features coming from several studies?
#34
drelo
closed
1 year ago
0
Error in -create.label [...] invalid argument to unary operator
#33
borexino
closed
11 months ago
2
error when running model.evaluation.plot with verbose = 3
#32
sophiepaschke
closed
11 months ago
1
check.confounders leaves empty object during tutorial
#31
drelo
closed
2 years ago
2
test on a new data from otutable
#30
Mushahid2521
opened
2 years ago
3
model interpretation plot error
#29
gpmoran
closed
11 months ago
6
Regression model?
#28
ntromas
opened
2 years ago
0
check.associations axis labels
#27
alex-d13
opened
2 years ago
0
Parallelization?
#26
metaganal
opened
2 years ago
0
model.interpretation.plot function with heatmap.type = 'fc'
#25
adehman
closed
3 years ago
2
Extract Z-scores from model.interpretation.plot
#24
flowerpotexpt
opened
3 years ago
0
check.associations paired test
#23
alex-d13
opened
3 years ago
2
Error when running check.associations
#22
alex-d13
closed
3 years ago
1
mlr
#21
akhst7
closed
2 years ago
0
Error when training enet model in latest version
#20
adamsorbie
opened
3 years ago
2
fix + footer demo
#19
maelle
opened
3 years ago
0
extracting list of plotted features
#18
adamsorbie
closed
3 years ago
2
Question about normalization
#17
choon-sim
closed
3 years ago
2
Build model using only metadata features
#16
andrewmaltezthomas
closed
3 years ago
1
vignette information about interpretation plot function
#15
danielbenjamintorka
closed
3 years ago
0
Bug in filter_features.r
#14
Thalla
closed
4 years ago
0
make model size smaller
#13
jakob-wirbel
closed
4 years ago
1
indicate NAs in heatmap under the model interpretation plot
#12
jakob-wirbel
closed
4 years ago
0
output as dataframe?
#11
GaioTransposon
closed
4 years ago
2
Cannot create siamcat object for very small datasets
#10
jakob-wirbel
closed
4 years ago
0
class.weights and cost parameters hard-coded
#9
KonradZych
closed
4 years ago
1
check.association should also check the features for testing
#8
jakob-wirbel
closed
4 years ago
0
train.model fails with any arguments to param.set
#7
akg2685
closed
4 years ago
4
Incorrect LOOCV split via create.data.split
#6
akg2685
closed
4 years ago
1
add pass-trough normalisation function
#5
jakob-wirbel
closed
5 years ago
0
model.evaluation.plot fails if siamcat object has not data split
#4
jakob-wirbel
closed
5 years ago
0
Include Matomo tracking for the SIAMCAT website
#3
jakob-wirbel
closed
5 years ago
0
Merge changes for Bioconductor release 3.8 into the master branch
#2
jakob-wirbel
closed
5 years ago
0
No pdf for feature associations when only 1 species is significant
#1
apalleja
closed
5 years ago
2