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## Description
When uploading a RNA case to Scout the cg upload -f command ran without any issues even though the connected DNA case was not sequenced yet, hence not available on Scout yet.
Th…
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Hello, hope you are well!
I am very excited to try out the low-memory and fast searches created by RocksDB :) (Also, I will definitely be making use of `pairwise`!)
On my way there, I encountere…
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- [ ] Datasets
- [ ] AlphaFold 3 PDB dataset
- [x] PDB mmCIF filtering script (`scripts/filter_pdb_mmcifs.py`)
- [x] Fix periodic residue count-chemical component coun…
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Hello!
Thank you for this brilliant tool.
I've been using it for an application in which syntenies inferred using `mummer`'s `nucmer` (so, at the DNA-level) were partial, when compared with `mumme…
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Got one error with missing data for 4 dna ids. However the filter_pair functions calls only the drug files. Can you help?
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### Background
Synthetic biologists use the Design, Build, Test, Learn (DBTL) cycle to engineer biological systems. The Synthetic Biology Open Language ([SBOL](https://sbolstandard.org/)) was develop…
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1) What operating system are you using?
ubuntu 12.04
2) What error message was displayed?
*** caught segfault ***
address 0x3604eb2, cause 'memory not mapped'
3) What was the exact command you…
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Hi there!
Thank for mold program!
I'm using the Mold GUI for macOS under Sonoma 14.5, Python Version: >3.6, Mold 1.4.
I encountered an UnboundLocalError when running MolD for DNA diagnoses of …
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Hi, I am using RepeatMasker v4.1.5 to mask repeats from a shrimp genome P. indicus, the *.fa.cat.gz was produced but the fa file cannot be masked. So I rerun the ```ProcessRepeats``` step:
``
Proc…
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Hi David,
Just leaving a minor issue here just in case anyone runs into it in the future. When running
`orthofinder -f primary_transcripts/`
I get the error
`ERROR: external program called by …