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Is it possible to lower the coverage threshold when running `dorado correct file.fastq.gz`?
I would like to be able to perform the correction even if the coverage is below whatever is the default t…
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Hello,
The freight is now 35000 on Dorado server, it would be helpful to have a parameter of the capacity...
Best regards
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Hi Shian,
The latest dorado basecalling models, e.g. dna_r10.4.1_e8.2_400bps_hac@v4.3.0, only support combined 5mCG_5hmCG or 5mC_5hmC for modified basecalling, not just 5mCG as before. However, the…
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### Prerequisites
- [X] I have searched all issues/PRs to ensure it has not already been reported or fixed.
### Criteria
- [X] Reasonably well-known and widely used (e.g. if it's a GitHub project, …
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# Issue Report: std::runtime_error (core dumped) with Dorado 0.7.2
## The issue:
I have basecalled my data (short read amplicon data) with several versions of Dorado and keep on having the same (…
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I see other users reported the same issue:
https://github.com/nanoporetech/dorado/issues/1029
The reply said it was because of the sup@v5 modification model. However, I've been using this model fo…
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`dorado basecaller` crashes when `alias` in samplesheet.csv contains a trailing whitespace:
```
+ dorado basecaller sup,5mCG_5hmCG --sample-sheet samplesheet.csv
terminate called after throwin…
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# Issue Report
## Please describe the issue:
Hi, I am trying to re-align sequencing results from an adaptive sampling experiment. So I want to run dorado aligner on the fastq_pass/ directory
Th…
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### Ask away!
I am continuously trying to install epi2me in the server using conda (centos based) but it is not happening. I have downloaded the Ubuntu / Debian version from here https://labs.epi2me.…
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# Issue Report
## Please describe the issue:
I am working on epigenetic analysis for bacterial samples using Oxford Nanopore sequencing (FLO-MIN114), and I’m transitioning from Tombo to Dorado for…