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Wondering if anyone on the Bend team or in the community has started thinking about a neural network library that runs on Bend or more generally on the HVM. Is the Bend API mature enough for that righ…
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Hi there and thank you for this great tool.
I'm trying to run CNV-normalization on MNase-digested HiChIP samples that had been processed through HiC-Pro and JuicerTools to make hic maps.
Running…
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@llfung talked to me today about his work on adjoint-accelerated programmable inference for large PDEs, and what would be needed on Turing's part to support that. As I understand it (and I know very l…
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```
To clarify the issue below we need to know if Pathway tools creates a
pathway in a Cyc database if there is only one reaction recognized (one EC
present)...
•Also the branched chain aminotransf…
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Hi,
I want to model Carbonic Anhydrase (5yui) active site, an enzyme included in
table 9 in Supplementary Methods article, and have below settings.
Are there any additional settings I should …
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Good people of DynamicPPL-land. I'm back from vacation, which also means I'm back with crazy ideas.
Here's my first one for now:
> What if we add our own `logpdf`, etc. in DynamicPPL?
I ask …
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I'm adding in this issue more as a note to myself, but also open to ideas - we need a collection of bacterial RBS and BCDs for the distribution. Please toss out ideas / suggestions / etc for these par…
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Hi there,
Adrian Hill (@adrhill) and I recently started a new unified differentiation package called DifferentiationInterface.jl:
> https://github.com/gdalle/DifferentiationInterface.jl
I'm g…
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At the minute the GPU/differentiable path is Zygote-compatible and hence uses non-mutating broadcasted operations. This works, but is rather slow and very GPU memory-intensive.
Long term the plan i…
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https://github.com/airbnb/enzyme#basic-usage
@jimmcgaw Thoughts?