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### Description of the bug
some of the docker containers used in the pipeline are in old deprecated docker formats, and docker doesn't want to pull them:
### Command used and terminal output
```c…
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**Snakemake version**
> 5.8.1
**NOTE:** I will go over why I'm not using the latest version in the **additional context** section
**Wrapper version**
> 0.64.0/bio/fastqc
**Describe th…
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Hi, I tried running the `.nf` file as below, but it hangs and doesn't do anything:
```
params.ncbi_api_key = ""
params.accession = ['ERR908507', 'ERR908506']
process fastqc {
container "bi…
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This crate would be useful as a lib. Any interest in expanding it to be one?
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I am getting an odd FastQC error when reading in more than one of my seqtk sub samples.
I ran, for e.g.:
seqtk sample -s100 TP29441.fastq.gz 10000 > ../sub_fq/TP29441_10k.fastq
if I open one se…
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hi. I recently executed this pipeline for my job.
But after I ran this pipeline and removed the output of the fastqc, I can't reproduce the output of fastqc (qc/fastqc/A-1.html for example).
Afte…
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**Describe the bug**
I have a collection of paired fastq.gz datasets, I wanted to run a fastqc on one of the forward reads so I dragged it into the tool panel and executed fastqc. Fastqc job ended up…
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Hi. I think in the file run_fastqc.R this
`if(!dir.exists("fastqc"))`
should be
`if(!dir.exists(paste0(destdir,"/fastqc")))`
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![p750_reverse_kmer](https://cloud.githubusercontent.com/assets/25803304/25551959/e8f78470-2c5b-11e7-8042-4f5da95b5c5b.png)
![p750_forward_kmer](https://cloud.githubusercontent.com/assets/25803304/25…
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Hello -
FastqQC is a very useful tool we've used for years. I know you have the ZIP version to distribute the code and dependencies; however, it would be helpful on our side if FASTQ could be buil…