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Answers questions like
1. How to get data
2. Where to get data from
3. Sfaira
4. ....
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Hi,
I am struggling a little with the FPKM output of Stringtie (StringTie v1.3.5). From my understanding which is supported by your response to issue #15 (https://github.com/gpertea/stringtie/issues…
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Thank you very much for providing cellchat!
When I run the function computeCommunProb on my data, I met below error
```
V59.cellchat str(V59.cellchat@data.signaling)
Formal class 'dgCMatrix' [pac…
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- [x] sld3 = treslin TICRR jackhammr iteration 7 (submitted to InterPRO)
- [x] Update species distribution
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Hi all, @FelixKrueger @ewels
I tried to run the pipeline with some data, but I had no idea about how they have been produced. I know just that they are methylation data. SO when fastqc run, I saw …
ewels updated
5 years ago
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Currently reviewing 'phenotypic similarity evidence' branch and creating this ticket to document discussions and notes.
James
[phenotypic similarity evidence.docx](https://github.com/evidenceont…
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As outlined in [A field guide for the compositional analysis of any-omics data](https://academic.oup.com/gigascience/article/8/9/giz107/5572529) CoDa should be the way to do single-cell RNA seq.
I…
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I am a bit confused about the "preparation of expression matrices" section in the STAR methods of the optimal transport paper. You define three different expression matrices: the UMI matrix, the log-n…
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Started from discussion on https://github.com/pombase/website/issues/2042
## Summary of what we discussed today
* Cons of current system:
* File naming and organisation might be improved
…
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### Task motivation
Spatial decomposition (also often referred to as Spatial deconvolution) is applicable to spatial transcriptomics data where the transcription profile of each capture location (spo…