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Hello,
I've been trying to use wgd V2 to calculate a Ks peak
I've taken a subset of my CDS (~3K sequences)
When I run
```
wgd dmd subset.fasta
```
I get:
![Screenshot 2024-06-25 at…
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Dear developer,
I’m a Ph.D student in France on Brassica napus (rapeseed) specialized metabolites against pathogens.
Your deep learning approach applied to pathways is very innovative. I'd like…
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Hi EVM team,
Thank you very much for this wonderful tool.
I am annotating a plant genome (~500 Mb), that has ~50% repeats that was masked by RepeatMasker. For annotation, I used a soft-masked geno…
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Hi David,
I have run OrhoFinder `2.5.4` on the example data with the `-y` option and otherwise default parameters. The HOGs in the file `Phylogenetic_Hierarchical_Orthogroups/N0.tsv` for the orthog…
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In the clustering process, some groups may have a large number of sequences, which do not have much impact on the whole analysis, but will occupy a large amount of computing resources. Can you set a p…
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We now only place fossils where the internal node label applied by TreeFAM exactly matches one returned by FossilCalibrations. This is very wasteful: many fossils are omitted. Unfortunately, the FC AP…
rvosa updated
8 years ago
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We would like to request the following terms be added as children of inheritance pattern (GENO:0000141)
chromosomal inheritance
def: An inheritance pattern wherein the trait is determined by inher…
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Hi Quentin
I haven't managed to find any information about how IGoR handles allelic variants presented in models. In default models some IGHV, TRAV and TRBV genes have several alleles (up to 7) and…
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Hello,
First of all, thanks for providing such a fantastic tool!
I wasn't quite sure where to write this because it's not strictly a bug, but I thought it worth highlighting the fact that dupl…
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![image](https://user-images.githubusercontent.com/77486663/201339273-4e011f74-7904-4498-8b1b-3135b760ad54.png)
I get the result, but the file Tree2GD.result.pdf opens like this, which is different f…