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Hi, I found a new error!
```
from LingerGRN.preprocess import *
Datadir='/home/baldini/sc/tbx1-2022/python_analysis/LINGER/'# This directory should be the same as Datadir defined in the above 'Down…
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https://doi.org/10.1101/103374
> Translation initiation is a key step in the regulation of gene expression. In addition to the annotated translation initiation sites (TISs), the translation process…
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Dear developers,
I encountered a problem like this:
The output of ananse network is wried
```
head -n 5 Di.network.txt
tf_target prob
AHR—A1BG 0.492401
AHR—A1BG-AS1 0.29674652
AHR—A2M 0.3…
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> **Background.** Gene expression is mediated by specialized cis-regulatory modules (CRMs), the most prominent of which are called enhancers. Early experiments indicated that enhancers located far fro…
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Genes don't have any facets - is there a list somewhere of what was discussed?
https://ui.ci.transltr.io/demo/results?l=Eletriptan&i=PUBCHEM.COMPOUND:77993&t=3&q=d1c6af0a-8f60-4f24-87fe-a5268c338ce…
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We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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Hi, I have some questions regarding the specific methodology of the [paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012776#:~:text=We%20developed%20GENIE3%2C%20a%20procedure…
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Hi
I'm interested in producing dendrograms, heatmaps, network plots (force directed network plots) and hierarchical edge bundle plots using the final merged members of each module.
From what I'v…
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The column consists of "estimate", "statistic" and "correlation" among others. What do the former mean really?
For example, an X-gene is being unregulated at level of mRNA, then the TF regulating th…