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* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…
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Good afternoon! I have been sporadically tinkering with my GRN analysis for some time, and I am running into various problems. For starters, the number of unique target genes detected by Pando is less…
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https://doi.org/10.1101/103374
> Translation initiation is a key step in the regulation of gene expression. In addition to the annotated translation initiation sites (TISs), the translation process…
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We have
https://www.pombase.org/term/MOD:00818
I wanted to check this using
https://services.healthtech.dtu.dk/services/NetGPI-1.1/
but I haven't been able to run the search to completion.
Pr…
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Hi, I have some questions regarding the specific methodology of the [paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012776#:~:text=We%20developed%20GENIE3%2C%20a%20procedure…
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[Essential] system size - data size relationship analysis
- why
- question is indeed too hard
- too many/few time points for each trajectory
- only config level limit, better fine-tuning c…
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Hey all!
I read your bioRxiv on "Benchmarking algorithms for gene regulatory network inferencefrom single-cell transcriptomic data" and was quite intrigued. I've been toying around with various fo…
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### Version
1
### DataCap Applicant
Lucas Tang
### Project ID
5
### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Region
United States
### Data Owner Industry
Life …
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My Dataset is Like this...
**SNP**
![image](https://user-images.githubusercontent.com/37298751/94503365-3d545980-0241-11eb-9a7b-0411ac7b1b8e.png)
**Gene Expression**
![image](https://user-im…
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Hi guys, really liking the pySCENIC adaptation (saving alot of time in our hands!) however, Im having the following issues with pySCENIC grnboost (through command line) when running on a large integra…