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Dear Edgardo,
Thank you very much for all your work on Captus!
I am currently trying to extract Angiosperms353 genes from my Captus-assembled dataset.
I am using the command
```
captus_ass…
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Currently, the seed database (on database schema 2.6.0), contains the MSigDB gene sets. This is useful for testing validation and loading of test study `study_es_0`, as well as potentially loading any…
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# Speed up over-representation enrichment analysis - A Bioinformagician
[https://jokergoo.github.io/2023/04/05/speed-up-over-representation-enrichment-analysis/](https://jokergoo.github.io/2023/04/…
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### Context
I am attempting to download the raw (unnormalized) Salmon counts for a set of human RNA-seq samples that span multiple studies (experiments) and compile them into a single read count ma…
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I've been developing a metagenomic/metatranscriptomics software suite called VEBA (https://github.com/jolespin/veba) that natively handles eukaryotic binning of metagenome-assembled genomes and exon-a…
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I recently realized that the gene sets that you are using in the tutorial differ quite a bit from the gene sets that are used in Seurat's `cc.genes` (https://satijalab.org/seurat/reference/cc.genes.ht…
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### Setup
I am reporting a problem with GSEApy version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_implem…
nroak updated
1 month ago
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Hello!
I'm having a slight issue with the annotations generated by EGAPx. When I translate the CDS into a protein sequence, I'm seeing a lot of premature stop codons. This is a species where I am s…
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I think it would be nice to have a `theme_monarch` function that gives plots some useful attributes.
Relates to #24.
# 1.
- [ ] Provide consistent colors for categories, predicates, etc. Atm the…