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Hi! Is it possible to use Human-GEM as the input model? The optimization steps are taking longer than the default time limit of 3000 seconds, but I am not sure what is a reasonable time to expect, or …
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Hi Jody,
The VCF produced by TbProfiler v6.3 violates the VCF v4.2 specification which might cause issues with parser and genome browsers. TbProfiler reports GQ values as Floats but the specificati…
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First off, thank you for the fantastic tool @jtlovell!
I noticed that there are some old issues (#121 and #127) where folks were interested in highlighting a single gene or small region. I have enc…
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Hi,
Just wanted to check the normalisation of some of the output files. From the output documentation:
"The number of reads aligned to the spike-in genome are then used to calculate a scaling fac…
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Hi!
I am using Hmmer3 with bivalve genomes looking for 70-80 aa genes. BUSCO scores for the genomes are in the upper 90s (96-98% complete for BUSCO Metazoa) and most assemblies are chromosome-scale…
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This is a list of repositories for sourmash, software for rapidly searching and analyzing genomes and metagenomes!
The main repository - [sourmash-bio/sourmash](https://github.com/sourmash-bio/sour…
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Interop Contact:
Active in 2021: Active
**Researchers**: Xihong Lin (Harvard T.H. Chan School of Public Health)
## Analysis Question:
Large-scale Whole Genome Sequencing (WGS) studies and biobanks h…
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Hi all,
Thanks for having develop these tools. I have run on test of synteny between 2 species with on chromosome-scaled reference genome and one more fragmented draft genome. I have aligned it wit…
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Hi Toshiyuki,
Congrats on developing this tool! I have a question on potential application of this gene cluster analysis:
I have RenSeq contigs and gene models. I would like to map them to a re…
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Hi,
I have been using minimap2 for many genome to genome alignments and I have noticed an odd pattern.
If I take a large genome like a human genome and align (paf output) the whole chromosomes …