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It would be useful to start exploring data that is close to use case as we configure the different GDI Starter Kit services. A possible solution could be to load VCF files in addition to or instead of…
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Please see https://github.com/ngs-docs/ggg-shell-genomics-ws - I got this lesson working in binder just fine!
Click launch binder, then go to New... Terminal... and follow through lesson! This coul…
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## Description
Recently we have been having issues with completing analyses for samples received from a specific customer, `cust127`. This issue has then required production to deliver vcf, fastq, …
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Hey,
Wanted to run this pipeline with comparable combinatorial barcoding snRNA-seq (Sci-RNA-Seq3) but realized an input file is missing.
Script: Section_1_processing.R - line 17:
"mouse_gene…
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Sample patient includes FHIR, DICOM, ECG, and genomics data.
https://registry.opendata.aws/synthea-coherent-data/
https://www.mdpi.com/2079-9292/11/8/1199
https://aws.amazon.com/blogs/industries/…
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Since the last rushed demo update, the frontend seems to have become slower than previous versions.
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The GREGoR (Genomics Research to Elucidate the Genetics of Rare diseases) Consortium seeks to develop and apply approaches to discover the cause of currently unexplained rare genetic disorders.
- L…
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# OGS remapping and manual annotations
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate ol…
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Please document any order validation rules that you discover in this list.
### Order validation rules
- For an order with plates, only one sample is allowed in each well.
- For an order with plat…
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Rather than looking at mutation frequency information from the entire pandemic, we're often only interested in recent sequencing (say, within the last 6 months).
## Handler
[Mutations by lineage…