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Hi, I'm trying to use your tool LEMON to establish a pipeline for HGT detection as it looks very promising. Unfortunately I'm not able to complete the installation as I encounter an error in the "make…
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I have a VCF file which is a merge of a set of VCF files and hence some columns have all values set to `.`.
```
##source=DRAGEN_SNV
##bcftools_mergeVersion=1.16+htslib-1.16
##bcftools_mergeComma…
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The `testInstantiation` in `tests.unit.test_faultydata.TestDuplicateCallSetId` is currently disabled because it provokes an error that results in htslib aborting. This is a bug in htslib. We should:
…
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Building popscle with gcc 9.4. It fails with the following messages:
In file included from /home/dodgec/xiss-64708/popscle-0.1-beta/hts_utils.h:42:0,
from /home/dodgec/xiss-64708…
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I've been trying to install cyvcf2 from the source.
But i end up with the following error.
I'm on MacOS Monterey v12.1 and i have a M1 chip (dunno if the problem can from here) and I'm using Python…
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I have made the following Dockerfile to install pindel
```
# Use Python base image from DockerHub
FROM python:2.7
RUN apt-get update && apt-get install -y \
bzip2 \
wget \
make \
n…
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Every attempt to ./INSTALL fails with this error:
> g++ -L/config/binaries/htslib/1.3.1/ -Wl,-rpath /config/binaries/htslib/1.3.1//lib pindel.o reader.o reporter.o searcher.o parameter.o refreader.…
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When I run make I get this error:
`user@servername:~/mccortex$ make all
cd libs && make core
make[1]: Entering directory '/home/ambarnilg/mccortex/libs'
# Run configure if config makefile not crea…
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On OS X El Capitan 10.11.6, when creating the conda environment I get the following error:
```
gcc -undefined dynamic_lookup -L/Users/markw/anaconda/envs/gatk/lib -L/Users/markw/anaconda/envs/gatk/l…
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Hello,
I have been trying to compile LEMON on our lab server. We are using Ubuntu I modified the makefile to point it to our system installation of htslib (`/usr/share/htslib-test`). I get an error…