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genepi
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haplogrep3
Free mtDNA Haplogroup Classification Service
https://haplogrep.i-med.ac.at/
MIT License
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Set trees directory relative to jar
#38
seppinho
closed
1 month ago
0
Incomplete installation documentation or release packaging error.
#37
vruano
opened
2 months ago
1
haplogrep3 yaml
#36
squigzzz
closed
1 week ago
4
Dot Conversion to Number Error
#35
DarioS
opened
7 months ago
3
Error Messages Don't Use stderr Stream
#34
DarioS
opened
7 months ago
0
Quality Formula Not Defined
#33
DarioS
closed
1 year ago
1
Command-line Input Can Only Be FASTA
#32
DarioS
closed
1 year ago
1
Example VCF is Not VCF Format
#31
DarioS
closed
1 year ago
1
Can it be used for a non-modal species?
#30
Ram-Nagar
closed
1 year ago
1
RSRS - PhyloTree 17.1 => Job failed
#29
niki0211
opened
1 year ago
3
CVE vulnerability in haplogrep
#28
JenniferVdL
opened
1 year ago
2
Add clean-workspace command
#27
seppinho
closed
1 year ago
0
Add task to export variants and annotations
#26
lukfor
closed
1 year ago
0
Add vcf statistics
#25
lukfor
closed
1 year ago
0
Add population frequencies to clusters
#24
lukfor
closed
1 year ago
0
Add command to create haplogroup clusters
#23
seppinho
closed
1 year ago
0
Add summary dashboard and introduce different haplogroup levels
#22
lukfor
closed
1 year ago
0
Add haplogroup, missings and global privates to QC report
#21
haansi
closed
1 year ago
0
Support .fa extension for FASTA files
#20
haansi
closed
1 year ago
0
Add checkbox to create additional output files
#19
lukfor
closed
1 year ago
0
Add examples
#18
haansi
closed
1 year ago
0
Remove covgrep
#17
haansi
closed
1 year ago
0
Use plugin architecture to download phylotrees from remote repository
#16
lukfor
closed
1 year ago
0
Improves useability
#15
lukfor
closed
1 year ago
0
Apply quality checks and integrate warnings and errors into web-application
#14
lukfor
closed
1 year ago
0
Add support of alignment rules
#13
lukfor
closed
1 year ago
0
Add distance function to form and show it in job details
#12
lukfor
closed
1 year ago
0
Show other hits in detail view
#11
lukfor
closed
1 year ago
0
Add trees
#10
haansi
closed
1 year ago
0
Add support of `baseUrl`
#9
lukfor
closed
1 year ago
0
Add documentation
#8
lukfor
closed
1 year ago
0
Add extended report and exporters for fasta and fasta-msa
#7
lukfor
closed
1 year ago
0
Update phylogeny to use reference from fasta file
#6
lukfor
closed
1 year ago
0
Cleanup phylogeny sites
#5
lukfor
closed
1 year ago
0
Refactore tree repository
#4
lukfor
closed
1 year ago
0
Update mtdna.gff file
#3
lukfor
closed
1 year ago
0
Add additional fileformats
#2
lukfor
closed
1 year ago
0
Renames clades to haplogroup and removes match score
#1
lukfor
closed
1 year ago
0