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Hello.
MMSeq2 dies after write error, The shell output is below. Anyone knows why this happens?
Thanks,
Torsten
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Create directory tmp
search kelp_database uniref50 res…
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I want to predict the phage-host using the SPacePHARER a tool developed by your team. I have metatranscriptome data and want to screen the bacteriophages. My question is what will be the .fas file (sp…
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User story: PBcR-MHAP uses Jellyfish configured to request 1 TB of memory. Luiz wants to use less memory.
http://sourceforge.net/p/wgs-assembler/svn/HEAD/tree/trunk/src/AS_PBR/PBcR.pl#l1621
A single…
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Hi @gjeunen,
I would like to extract the amplicon regions from the same database using the insilico_pcr and pga functions for a large number of primers. I tried setting up a SLURM job to do this, …
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p100のkallisto.idxの作成コマンド以下を試しましたがerrorがでました。
kallisto index --index=~/Documents/expression/ref/kallisto.idx ~/Documents/expression/ref/Homo_sapiens.GRCh38.cdna.all.fa.gz
[build] loading fasta file…
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Hi,
I have a little over 1 million proteins from a metagenome I would like to perform an easy-search on Alphafold/UniProt50. I am running foldseek on Google Cloud so I am fairly flexible on CPUs an…
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I downloaded the latest binary for my linux server and created a simple reference with 1 sequence in it.
```
> kallisto version
kallisto, version 0.44.0
> kallisto index --index myref myrefere…
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I'm not sure if this is an intended use case for Neptune, but I attempted to run the program with ~150 inclusion genomes (450 MB) and ~8000 exclusion genomes (32 GB) and it caused the program to crash…
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I am working with a student who is having this issue with their execution of nextflow
```
executor > local (3)
[30/a60146] process > assembly:porechop (H37Rv.1) [100%] 1 of 1 ✔
[24/79a658] pr…
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The REST endpoint for listing running jobs is /admin/system/jobs.
I don't think that this is used by any piece in the client.
My test machine is seb-kbase-devel.mcs.anl.gov.
The plan is to reproduc…