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Hello,
First of all thank you for making such an amazing program, secondly I was wondering if you could provide some advice on how to handle a very large query database. I have several terabytes th…
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Command line: /usr/local/bin/spades.py -1 /app/data/R1.fastq -2 /app/data/R2.fastq -o /app/data/output/spades_assembly/read_correction --only-error-correction
System information:
…
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Hello.
MMSeq2 dies after write error, The shell output is below. Anyone knows why this happens?
Thanks,
Torsten
___________________
Create directory tmp
search kelp_database uniref50 res…
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mmseqs easy-cluster crashes with a very simple file as an input:
```
>UPI0005E38868_574-614
EKVDQNTADITTNTNSINQNTTDIATNTTSINNLSDSITTL
>A0A2T6WYU8_88-128
ENVSQNTADITTNTNSINQNTTDIATNTTNINNLSDSITT…
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User story: PBcR-MHAP uses Jellyfish configured to request 1 TB of memory. Luiz wants to use less memory.
http://sourceforge.net/p/wgs-assembler/svn/HEAD/tree/trunk/src/AS_PBR/PBcR.pl#l1621
A single…
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Here is my running code:
```
time metawrap quant_bins -b temp/bin_refinement2/ref4/metawrap_70_5_bins/ \
-t 48 -o temp/bin_arg/quant/summer \
-a result/megahit/summer.contigs.fa \
tem…
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Dear Team,
I ran metaspades with k21 and with an option just for assembly. I am using spades version 3.13.
While starting the kmer counting its throwing an error with code -11. I have gone throug…
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### Description of bug
HI,
I am trying to assemble genome skim data, on spades (have tried both installing through conda and through downloading source code and compiling) and every time I do, I get…
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p100のkallisto.idxの作成コマンド以下を試しましたがerrorがでました。
kallisto index --index=~/Documents/expression/ref/kallisto.idx ~/Documents/expression/ref/Homo_sapiens.GRCh38.cdna.all.fa.gz
[build] loading fasta file…
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I am working with a student who is having this issue with their execution of nextflow
```
executor > local (3)
[30/a60146] process > assembly:porechop (H37Rv.1) [100%] 1 of 1 ✔
[24/79a658] pr…