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Hello,
I'm trying BASALT with a subset of my data. It looked to work fine until the step as follows that failed with the error in the title.
```
===== Mismatch correction scaffolds finished.
…
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I am trying to test kage 0.11.14 but cannot for some reason kmer_mapper does not work. The command and error message:
kmer_mapper map -b index_2548all_uncompressed.npz -f 210435_S26_L001_R1_001.fq …
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Dear Authors:
Here is my kmer distribution result from the hifiasm v0.15.4 on ccs hifi reads with default paras. There is no peak and I don't know why would this happen.
I use the hifi data run a…
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I really appreciate the advantages of your tool kmer-db compared to other tools, and I'm very interested in using it. However, I noticed that the result files (all2all, new2all, and one2all) only outp…
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Dear Henry
many thanks for this useful tool! I tried the test file and got the files "both.fa", "bayesdenovo.sam", "bayesdenovo.fa", "assembly.fa" and "Assemble.log", as expected. However, when run…
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This was first mentioned on Slack by Sorina: https://iqbalgroup.slack.com/archives/C5MANUB17/p1504131606000222
This link shows benchmarking of different hash functions for random and sequential int…
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Attempting to run br on a 15 Gb dataset of reads > 10kb with parameters:
`br -k 19 -i STL_F2_isoline_pooled.10k.fa -o brutal-out -t 32`
It gives the error, "Error: Can't compute minimal abundance"…
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Hi Sam,
Thanks for all the effort on Uncalled4, this is really a great package.
I've noticed you started working on readstats on the dev branch which would be helpful for what I'm trying to do, wh…
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Hi, I am trying to run on a large amount of samples (900M reads).
command:
`Trinity --seqType fq --max_memory 50G --left all_1P.fq.gz --right all_2P.fq.gz --SS_lib_type RF --CPU 16 --no_salmon`
T…
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## Description
Replace the uses of `Eigen::SparseMatrix` (e.g., in CSR multiply) with more efficient custom code. As an example, @blackwer wrote faster code than Eigen for a project we did here on…