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Hi, I'm trying to run the flow via snakemake (snakemake --cores all --use-conda ) but I get this error.
https://raw.githubusercontent.com/akcorut/kGWASflow/v1.3.0/workflow/rules/common.smk:98: Sy…
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The `_shred` method returns a ordered list of kmer IDs. Assert two subsequent kmers in the list are neighborly (share a k-1 mer in common) or else do not increment that edge (it mustn't exist)
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Dear developers:
openDBA has many applications, which are very interesting. Nanopore provides a kmer model for generating standard nanopore signals. By providing a sequence based on this kmer model, …
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Running `count compress` with multiple read files and an empty file as the first file does not apply homopolymer compression. The following command creates an index without homopolymer compression:
…
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Dear pioneers for much improved pathogen detection,
we have an example from nanopore (resulting in long reads > 1500 bps) where the kraken1-part of krakenuniq counts over 12000 kmers (k = 31) for a…
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Hi, I'm getting an error in the multiqc step of the workflow when running it with the ecoli test dataset.
Here's a snippet of the error:
```
Error in rule multiqc:
jobid: 1
input: re…
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Dear krakenuniq-team,
1) Take the two reads from below (at the end of this issue-report) an put them in a fastq file (lets call the file "/mnt/covid/fastqs/error.fastq"). The file contains two read…
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Hello SchulzLab,
I tried to run ORNA, but came out with the following errors:
```
(tsm-py3) tanshiming@S620100019205:~/Documents/CaoBin/October-2018/trimmed_duk_kmer31$ ORNA -pair1 /home/tanshi…
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In trying to make a hashmap of hashmaps using khash.d, I run into the issue of a segfault when using the ```require``` function.
Segfault happens here as a double free (I think):
https://github.com/…
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