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In looking for miRNAs in AmiGO it struck me that we seem to have only Dmel and Atal:
The reason for this is that annotations from RNAC are all uniformly typed with 'ncRNA'
```
RNAcentral URS0…
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Following standard practise in scientific writing, in the opening paragraph of https://mirtop.github.io/ please list the abbreviation in full at first usage:
> The main goal of this project is to c…
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Hi,
Is there a relation in RO that would be applicable to make this kind of annotation;
Gene product X is located in (GO:0070062) extracellular exosome that has derived from a cardiac fibroblast cel…
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Hi
I tried to perform a DE experiment with already processed data. Nothing is working...
Please let me know how to retrieve the count matrix from the detection module to use another app to DE an…
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Hello!
my name is Natasha and I am following the tutorial on http://bioconductor.org/packages/devel/bioc/vignettes/GDCRNATools/inst/doc/GDCRNATools.html#cernas-network-analysis-of-degs
I have 2…
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hello! I am learning how to screen differently expressed miRNAs between Normal tissues and Tumor tissues according to help documents. However, I do not understand the following continuous
codes from…
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Dear Sebastian,
Why does quantify map the mature onto the precursors?
Best, Maibritt
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After creating a new list of genes, they should be made all capital letters. Especially, since when creating a new list of gene, the user can type small case letters, which match the gene name, and it…
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**long non-coding RNA**: I used definition from wikipedia: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides.
Alternative term: lncRNA
Parent: …
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When using `isoCounts` function with different isomiR types set to `TRUE`, it seems the counts for that type is added to the original counts matrix in the object:
```
ids_counts_all = isoCounts(is…