-
### Describe the bug
Both of these templates ([`mni_icbm152_t1_tal_nlin_asym_09c.nii` packaged in C-PAC](https://github.com/FCP-INDI/C-PAC/blob/develop/CPAC/resources/templates/mni_icbm152_t1_tal_n…
-
I have added the BIDSifed data for the mni-bmpd data along (contains both images and segmentations). It is in the branch **rb/initial-data**
@mguaypaq Can you please review this?
-
- [ ] brain activity modeling (if research shows value)
- [ ] sharing of protocols
- [ ] library of preoptimized targets
-
**What would you like changed/added and why?**
Allow NiftiMapsMasker.fit_transform to take a list of images as input, just like how ConnectivityMeasure.fit_transform can take a list of inputs.
*…
-
About half the subjects had similar errors:
> data/freesurfer/sub-MP02312/mri/orig/001.mgz /scratch1/03201/jbwexler/openneuro_derivatives/derivatives/fmriprep/ds003669-fmriprep/sourcedata/f…
-
Hi!
We ran into a problem that the cropped image from 'suit_isolate_seg' step didn't fully cover the cerebellum for some of our participants' T1w. We adjusted the bounding box using the 'bb' comma…
-
I'm using this:
scripts/tf/register.py --moving t1_mni.nii.gz --fixed MNI152_T1_1mm_brain.nii.gz --moved t1_mni_voxelmorph.nii.gz --model vxm_dense_brain_T1_3D_mse.h5
t1_mni.nii.gz is a affined i…
-
Hi, according to the documentation, the `sub-001_T1w_label-lesion_roi.nii.gz` has been put in the bids folder then run the `qsiprerp`.
But I wonder how to get the lesion mask of MNI space? The output…
-
The older mni.cortical.statistics tool could write out a file with a header, which brain-view, and other MNI vertstat\* programs could understand.
It would be nice if RMINC could save in that format …
-
https://github.com/FCP-INDI/C-PAC/blob/63c66c3b1d5e3f662ce2ffb521598364805156e4/CPAC/pipeline/cpac_pipeline.py#L2434
When writing functional data to MNI space, if a linear anat-MNI transform was ca…