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**Describe the bug**
`ants.motion_correction()` fails intermittently (over timepoints) on 2-photon imaging data with micron resolution when the resolution is correctly specified (either in microns or…
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@matchings @jeromelecoq
I've noticed something odd, and I'm not sure if its a bug, but I can't think of a reason why it might be true. Some sessions have df/f values that are exactly equal to zero. …
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Import S2P directly instead of going through ophys_etl. Should give the same results given Johannes's prior investigation into the differences between ophys_etl and vanilla s2p.
Notes 7/12:
Based on…
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Notes 7/12:
* suite2p already produces metrics
* ophys_etl may have additional metrics that could be useful
Notes 7/19:
Suite2p uses a PCA-based approach to find the most varying frames in the regi…
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Since we are now benchmarking drift registration, and that results starts to work, I was wondering if we could start thinking about a way to properly save a "preprocessing" pipeline, such that it coul…
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[RMI/ KNMI / site specific] Is more better, and how to check this?
Number of frames, other parameters
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Various members of the science team have expressed displeasure working with the webm movies that automatically get produced as a part of our motion correction pipeline. See, for instance
https://gith…
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I understand that Fast-BEV uses 4 consecutive frames to improve performance. Do you correct the BEV features of the past frames before temporal fusion (concatenation)? I would naively think that some …
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Hi,
First - this is a great package, thank you for the contribution and the maintenance :)
Second - I'm getting some pretty significant motion correction artifacts when I use the default granularit…