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**Describe the bug**
[Opening an image stack with "Open files as stack" and then running brainreg in napari on the stack fails with trace below](https://forum.image.sc/t/use-registered-atlases-from-b…
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Hello,
I hope that you are doing well.
We have been using the Allen CCF to register data so that we can compare our findings across multiple animals. We really love the tool (a brilliant idea!),…
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Related to obophenotype/uberon#693
Should EMAPA have a trigeminal placode? It has other placodes.
On a related note:
```
[Term]
id: EMAPA:16663
name: trigeminal V preganglion
namespace: anatomical_…
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Hello CL Team,
Atlas of the Aging Mouse Brain brings up some new concepts/terms that are currently missing in CL https://singlecell.broadinstitute.org/single_cell/study/SCP263/aging-mouse-brain#stu…
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Hi pySCENIC developers,
I tried with pySCENIC roughly, and the results were pretty good and interesting, which confirmed by our Seurat foundings.
But I am not very sure how to interpret the result…
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I am using Seurat v4.4.0 and I was attempting to load pbmcref data. At beginning, I faced an error during loading the data
`InstallData('pbmcref.SeuratData')`
this was solved by following [#15 ](url…
MWRR updated
2 months ago
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Hi,
I am encountering the issue with the var.features which is not present in the meta.data. I tried to manually add the col var.features and still no luck.
`query.projected
apal6 updated
3 months ago
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A key requirement for all BrainGlobe tools is that they can _reasonably_ (say hours - 1 day) on PhD student laptops, to make the tools accessible for everyone. It is therefore important that we ensure…
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Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
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the latest batch of surveyor sheet maps uses hybrid maps - my reasoning was that it can be tricky to identify where many grid squares are, and that the labelling on the hybrid maps would help readers …