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Step to reproduce:
1. Go to SCXA home page and click on `CFTR` link from the list of examples
**Expected result:**
In the resulting table the `Number of assays` should be populated of the number of…
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Hi,
First of all, thank you for this wonderful tool.
I used CTAT_Mutations v3.2.0 in Conda environment and I am wondering why 'subprocess.CalledProcessError' is happening.
the command line is:
…
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When using `cosmic_fit` to assign mutational signatures to my samples, I identified SBS1, SBS5, and SBS19.
I then extracted these three signatures to refit using `denovo_fit`. However, I noticed di…
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Specifically these ones.
https://cancer.sanger.ac.uk/signatures/experimental/
Thank you
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The patient view of a patient with mutational signature data is currently broken:
```
{"type":"ErrorBoundary","log":"TypeError: /\\(([^)]+)\\)/.exec(...) is null","url":"https://www.cbioportal.org/p…
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Hi,
I finished SIgProfilerAssignment and got matrices in the output. Which matrices should I use as input to SigProfilerExtractor? I see it doesn't support MAF files for each samples like SigProfiler…
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From Slack:
> I was worried that the new ARG construction procedure was creating larger polytomies than before (which could explain why we are tracing recombinants back to MRCAs at only 2 timepoint…
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- [x] Lot of whitespace initially between chart and interactable component. Maybe we can have some expand-like animation of the bottom chart, so the table controls are more visible on page load?
inodb updated
5 months ago
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Hi Team,
I had a query. I would like to extract which mutations are assigned to which SBS signature for each sample. Is there a way I can do that? I am using sigProfiler Assignment.
Thanks in advanc…
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Dear developers,
Thanks for this tool!
I've successfully run cosmic_fit for both SBS96 and DINUC context types, but am getting the following error when attempting to run it for the "ID" context ty…