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### Ask away!
Hi, I'm attempting to run the workflow with nextflow + apptainer and keep getting the error message:
```
ERROR ~ Error executing process > 'pipeline:getVersions'
Caused by:
Fa…
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**Describe the issue**
A clear and concise description of what the issue is. Please include the following in your issue report along with any explicit errors observed
* Pipeline release version `5.3…
tgebo updated
3 months ago
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### Description of the bug
Hi.
I'm encountering an error with the methylsig pipeline when using bwameth aligner. The pipeline runs fine with Bismark, but my mapping is low (~40%) and I want to com…
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When looking at the list of NAO repos, I always find it hard to remember which of 'mgs-workflow' or 'mgs-pipeline' is which. @jeffkaufman uses 'v1 pipeline' and 'v2 pipeline' to distinguish them. Perh…
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We are updating the way containers are built.
Ideally we would like to automatize the developing process and the user-experience when installing the pipeline.
Actions:
- [ ] add dockerfile recepies …
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### Description of the bug
When not supplying `--input` (directly or indirectly through use of profile) in a cmd like
```
nextflow run nf-core/sarek -r 3.4.2 -profile docker --outdir results
```
…
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Hello!
I'm trying to run the hadge pipeline (v0.2.0) and am running into issues with the hashing demultiplexing side using conda. Wondering is this part of the pipeline considered stable? Using Nextf…
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I encountered an issue while running the BACANNOT pipeline, specifically with the GET_NCBI_GENOME process. Here is the error message I received:
```console
ERROR ~ Error executing process > 'BACA…
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> [!WARNING]
> Please open PRs against the `batch_update_staging` branch. Then we can have small, easy to review, atomic PRs but also merge all batch updates to the modules repo in one go.
> [!NOT…
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Having a single `config.yml` for all steps of a workflow would have several benefits:
* Avoid redundant definition of common arguments (e.g., zarr plate directory, project folder, etc.).
* Reuse the…