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fmalmeida
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bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
https://bacannot.readthedocs.io/en/latest/
GNU General Public License v3.0
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Include Phylogeny?
#124
fmalmeida
opened
1 day ago
1
Add pgpg_finder
#123
fmalmeida
opened
1 month ago
0
Add Bactabolize tool
#122
fmalmeida
opened
2 months ago
0
Wrap up v3.3.3
#121
fmalmeida
closed
3 months ago
0
Update integron finder tool version
#120
fmalmeida
opened
4 months ago
0
118 add skip integron finder param
#119
fmalmeida
closed
4 months ago
1
emote origin did not advertise Ref for branch refs/heads/116-integron_finder_2gff-terminated-with-an-error
#118
JavariaAshraf
closed
4 months ago
20
Fix issues #116
#117
fmalmeida
closed
4 months ago
0
BACANNOT:INTEGRON_FINDER_2GFF (vibrio9)` terminated with an error exit status (255)
#116
JavariaAshraf
closed
4 months ago
10
Update Zenodo Project distributed with Paper
#114
fmalmeida
opened
7 months ago
0
Wrap-up patch release v3.3.1
#113
fmalmeida
closed
8 months ago
0
111 error on summary step when missing annotationidtxt key
#112
fmalmeida
closed
8 months ago
0
Error on SUMMARY step when missing annotation/id.txt key
#111
mladen5000
closed
8 months ago
7
Update docs for v3.3
#110
fmalmeida
closed
9 months ago
0
107 duplicate reads to unique read names
#109
fmalmeida
closed
9 months ago
0
100 update pipeline docker images from docker tags to docker shasum
#108
fmalmeida
closed
9 months ago
0
Duplicate reads to Unique read names...
#107
Michaelijesse
closed
9 months ago
4
98 include ices and prophage annotation in json summary
#106
fmalmeida
closed
9 months ago
0
PacBio Genome Assembly - Low - Compared to its Reference
#105
Michaelijesse
closed
9 months ago
0
Feature request: Add reads de-duplication step before assembly
#104
Michaelijesse
closed
9 months ago
8
include information of newly known issues
#103
fmalmeida
closed
11 months ago
0
Summary
#102
CarmenMartinezSeijas
closed
11 months ago
5
96 error summary for bugfix release
#101
fmalmeida
closed
11 months ago
0
Update pipeline docker images from docker tags to docker shasum
#100
fmalmeida
closed
9 months ago
1
Include known issue form #96 in the Readme
#99
fmalmeida
closed
11 months ago
0
Include ICEs and prophage annotation in json summary
#98
fmalmeida
closed
9 months ago
2
generate a new (updated) pre-built pipeline database
#97
fmalmeida
closed
3 months ago
2
Error Summary
#96
josefdiaz
closed
11 months ago
12
Add dbscan-swa tool
#95
fmalmeida
opened
1 year ago
0
Add option for prebuilt db download
#94
fmalmeida
closed
1 year ago
0
Wrap-up v3.3 for release
#93
fmalmeida
closed
9 months ago
0
MLST step failed
#92
Moana63
closed
3 months ago
8
69 tools to use own docker image
#91
fmalmeida
closed
1 year ago
2
81 add tool mob suite
#90
fmalmeida
closed
1 year ago
1
85 prokka module can get after modules stuck if the header file longer than 20 and not separated by tab or space
#89
fmalmeida
closed
1 year ago
1
Wrap-up `dev` and release v3.3
#88
fmalmeida
closed
9 months ago
12
50 add tool integron finder 20
#87
fmalmeida
closed
1 year ago
0
AMR Finder get error
#86
minhtrung1997
closed
1 year ago
6
Prokka module can get after modules stuck if the header file longer than 20 and not separated by tab or space
#85
minhtrung1997
closed
1 year ago
7
TypeError raised by falmedia.py
#84
wonitawowowo
closed
1 year ago
4
Add pre-formatted database (#82)
#83
fmalmeida
closed
1 year ago
0
Add pre-formatted database
#82
fmalmeida
closed
1 year ago
0
add tool: MOB-suite
#81
fmalmeida
closed
1 year ago
2
Provide databases as a .tar.gz
#80
fmalmeida
closed
1 year ago
2
Resource error (139,140,...) when run on slurm HPC
#79
minhtrung1997
closed
1 year ago
3
Issue in KOFam database download
#78
minhtrung1997
closed
1 year ago
13
enhance circos plot
#77
fmalmeida
opened
1 year ago
0
75 upgrade bakta to 151+
#76
fmalmeida
closed
1 year ago
0
Upgrade Bakta to 1.5.1+
#75
sunitj
closed
1 year ago
4
Latest updates from dev
#74
fmalmeida
closed
1 year ago
3
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