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After talking with the BioImage Archive people, I think implementing OME-zarr support (remote and local) would be a HUGE driver for adoption. Here's some samples I got from them:
1. The first one, …
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Sorry for the continuous questions, and I'm really at the beginning stage of spatial transcriptomics.
I aligned my confocal image (Z-stack OME TIFF file) with the Xenium dataset in Xenium Explorer.…
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From the 2024-09-04 challenge meeting: a command which simply wrote (or updated?) the `ro-crate-metadata.json` file with the appropriate parameters would be useful for post-processing datasets.
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Issue was raised on forum thread https://forum.image.sc/t/how-to-split-and-recombine-multiple-series-with-bfconvert/73662/2
In the thread the user had a multi resolution file (SCN format) with addi…
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To my understanding, `zarr` supports rewriting with the `mode= "a"`. However, it is not supported by `ome-zarr-py`.
# Example code
```python
import zarr
import ome_zarr.io, ome_zarr.writer
v…
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Hi @trautmane ,
when meeting @bogovicj some time ago at EMBL, he told me that adding support for OME-Zarr metadata to the n5 client would be a matter of adding/modifying just a couple of lines.
…
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Fabricated designs often have features that are eroded or dilated (for instance see [[Wang 2019]](https://opg.optica.org/ome/fulltext.cfm?uri=ome-9-2-469&id=403749). It would be interesting to account…
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Hi Filippo,
I am not sure if you are familiar with **ImageJ/Fiji**.
In case you are, I would share this issue.
I have an ome.tif file that was saved via Fiji's Bio-Formats Exporter: when I drag …
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```
What steps will reproduce the problem?
1. Operating upon a 6MB jpg crashed the app with OutOfMemoryException
2.
3.
What is the expected output? What do you see instead?
Did not expect an OME
Wh…
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```
What steps will reproduce the problem?
1. Operating upon a 6MB jpg crashed the app with OutOfMemoryException
2.
3.
What is the expected output? What do you see instead?
Did not expect an OME
Wh…