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Hi,
Thank you for your great tool.
My reads (in the bam file) are already shifted. Is there a way to prevent ATACorrect from shifting them again? Can I just set the --read_shift parameter to "--re…
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Hello,
Occurs_at is not in the Relations Ontology, and its intended usage is the same as 'occurs_in', therefore we will deprecate occurs_at. Annotations should be reviewed and moved as suggested, …
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https://mp.weixin.qq.com/s/u2I12GvR3YJJ5h6EJktXcQ
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Please provide as much information as you can:
* **Suggested term label:**
chromatin maintenance during transcription elongation
* **Definition (free text)**
The maintenance of chromatin stru…
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* **UniProt KeyWord (ID and label):**
Cnp1 (CENP-A)
GO:0000776 | kinetochore | IEA with KW-0995 | GO_REF:0000043
* **Sequences with problematic annotation (ID + gene/protein name):**
Q9Y812 (p…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/js2264/HiCExperiment
Confirm the following by edi…
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I have a pgl file with over 1.5 million rows, pgltools merge is taking very long time to run.
Any way to speed it up?
Thanks for this useful tool!
Tommy
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Hello dear fellows:
When analysis on ATAC-flow with sample sheet by snakepipes(v2.5.0) after DNA_mapping, met CSAW exception but could finish successfully without sample sheet. I also tried on new …
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**Usecase 1:**
1. Finding transcription factor binding sites with tf_comb
2. Market basket analyses for finding transcription factor binding sites
Files should be delivered by **WP1** and **WP2**…
oKoch updated
2 years ago
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Hi Mette,
Thanks for developing this tool, we are very interested in bringing this analysis into more of our scATAC workflows! While hoping to optimize for running time, I found the --track-off opt…