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Hi,
I am struggling to workout and estimate minimal resources to run cactus for 100 genomes mammal size.
I can use CPUs, GPUs but I need to estimate amount of resource for an amount of time (project…
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Hello there,
I want to build a pangenome for a genus of grasses (_Hordeum_) I am working on in order to do some analysis. I have been playing with `pggb` for a while now but I think is time to requ…
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Hello, when i ran the braker3, i meet a question as follows:
FASTA index file /public/home/pengyan/bioproject/23.Chil_pangenome/01.data/10.ann-2/SC/03.brake/braker/GeneMark-ETP/data/genome.softmask…
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Hi, we recently downloaded the Pangenome assemblies in the AGC format, and we extracted individual assemblies in fasta format. We noticed that contig names do not match human chromosome names. Are we …
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Recently a user asked about a tutorial for using Roary on Galaxy: [Ghelp post](https://help.galaxyproject.org/t/help-with-roary-data-visualization-in-galaxy/6549).
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I want to represent the presence/absence matrix of the pangenome with the newick tree using gheatmap. I want presence in black and absence in white:
```
pangenome
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Hi !
I am trying to generate VCF from the GFA produced by the PGGB pipeline.
I attempted to use `deconstruct`, and everything works fine on smaller GFA files, such as when I only include two species…
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Hello,
Much appreciated for your excellent work.
I try to run your code in my project with pangenome command.
I met a error as following:
Starting ====== 2020-02-27 12:40:48 ======
Traceback…
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Hi,
I have built the Graph Pan-genome, how should I use the tool to characterize it and dig deeper into the potential information it contains. Or is there any other analysis tool recommended.
Best…
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Hello vg team
It is amazing the work you are doing.
I am relatively new to using vg and I would appreciate a little help with my question please.
I want to download an already constructed human pa…