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Hello,
is it possible to use a qualitative phenotype in variant tools (with my own R test) ?
I tried, but received the following error message :
Invalid (non-numeric) coding in phenotype/covari…
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- [x] transfer codes from https://github.com/mhorlbeck/ScreenProcessing/blob/master/screen_analysis.py
**QC plots**
- [x] #22
- [ ] Histogram of guide counts distribution
- [ ] PCA plot
- [x]…
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I am unable to create a phenotype input file. I tried creating a normal text file with two column for sample Ids and phenotype. I also tried creating a vector in R with just the phenotypes, but it is …
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This is @manulera code to create the phenotype submission spreadsheet for heterogeneous phenotypes
from https://elifesciences.org/articles/88229
To generate genotype-to-phenotype datasets…
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In a recent meeting with Tony Hickey, external SME, he provided feedback on the Translator UI related to what he refers to as "convergent phenotyping", which is essentially the idea of leveraging shar…
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I will add examples to this ticket later
@kshefchek…
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Hello,
You mention in the Building Environment section that a binary phenotype is required.
Does that mean quantitative phenotypes are not supported?
If so, do you have any plans to include the…
sinog updated
4 years ago
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Say you hypothetically had three phenotypes - cough, headache, and congestion. These phenotypes will all highly correlate with each other among individuals. Wouldn't this correlation inflate the Baye…
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This issue concerns the anophthalmia phenotype reported for 1700034E13Rik on the abnormal eye morphology page
https://nginx.mousephenotype-dev.org/data/phenotypes/MP:0002092
The supporting data link…