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caitiecollins
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treeWAS
treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
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ClonalFrameML input and treeWAS output position
#77
Angelika-2Z-Borowiecka
opened
1 month ago
0
negative association score
#76
DorothyTamYiLing
opened
2 months ago
2
issue with loading phenotypes
#75
rderelle
closed
3 months ago
1
A warning after treeWAS
#74
allanlinzhang
opened
4 months ago
0
A warning after
#73
allanlinzhang
opened
4 months ago
0
long vectors not supported yet
#72
daisy238
opened
5 months ago
3
About the significant snps
#71
xqzangnolan
opened
11 months ago
0
Error in treeWAS(snps = snps, phen = phen, tree = tree, n.subs = NULL, : Some elements of tree$tip.label are absent from names(phen).
#70
xqzangnolan
opened
1 year ago
1
memory error
#69
DorothyTamYiLing
opened
1 year ago
0
multiple testing p values
#68
DorothyTamYiLing
closed
1 year ago
0
Error in ncol(snps.ori) : object 'snps.ori' not found
#67
jiyekwon
opened
1 year ago
0
Ancestral state reconstruction with phytools
#66
ruutmdlv
opened
1 year ago
2
Error in ncol(snps.ori) : object 'snps.ori' not found
#65
Tonny-zhou
closed
1 year ago
12
Error in inputting snps ASR
#64
moorembioinfo
closed
1 year ago
3
input data
#63
mohammadzarrabian
opened
1 year ago
5
Nsim loci simulation and subsequent test understanding
#62
DorothyTamYiLing
closed
2 years ago
3
Testing burden score binary variants association
#61
DorothyTamYiLing
closed
2 years ago
3
how to construct a snp matrix
#60
ShiminYang97
closed
2 years ago
1
Question about the output tree from TreeWAS
#59
npbhavya
closed
2 years ago
1
Test data annotation
#58
Maxime5G
closed
2 years ago
0
Just a question: Can you recommend method for SNPs matrix generation?
#57
martinastoycheva
closed
2 years ago
2
TreeWAS on animal and plants?
#56
ViriatoII
closed
2 years ago
0
Huge peak in the distribution of terminal scores
#55
pchamely-2
closed
2 years ago
0
Too few positive probabilities Error
#54
amzurita
closed
2 years ago
2
Installation of treeWAS
#53
mozammel47
closed
2 years ago
0
Installation issue - dplyr_reconstruct/adegenet error
#52
GaryNapier
closed
2 years ago
0
Memory problems
#51
GaryNapier
closed
2 years ago
2
QQ plot behavior
#50
jpa24
closed
2 years ago
0
p.value question
#49
mrchase62
closed
4 years ago
2
'snps must be a binary matrix' error with my data, works fine with example data
#48
antoineluc
closed
4 years ago
0
Warning when comparing columns in snps.reconstruction and snps matrix.
#47
arturotorreso
closed
4 years ago
3
Error in phangorn dependency - non-binary tree
#46
mycologenomics
closed
4 years ago
2
Need to help to find effect/odds ratio
#45
liweicheng0011
closed
2 years ago
0
Accessing data points not considered significant
#44
jessg28
closed
4 years ago
1
Coding genotype for diploids
#43
YannDussert
closed
2 years ago
0
No polymorphism detected
#42
ywx1
closed
2 years ago
0
Base insertion and deletion
#41
ywx1
closed
4 years ago
3
add to CRAN?
#40
nick-youngblut
closed
4 years ago
5
Error in generating Manhattan plot
#39
JialunWu
closed
5 years ago
2
Axis problem
#38
Nerdobyte
closed
5 years ago
1
plot_phen
#37
evezeyl
closed
2 years ago
1
gene presence absence and input simple question
#36
camilo-monge
closed
5 years ago
1
Launching error TreeWas
#35
sekhwal
closed
5 years ago
3
Tree Plot Error: Error in num2col(var, col.pal = seasun) : could not find function "num2col"
#34
WallyL
closed
2 years ago
12
General question about phenotype data
#33
WallyL
closed
5 years ago
2
browseVignettes("treeWAS") & test data set fails
#32
WallyL
closed
5 years ago
3
install error..
#31
ghost
closed
5 years ago
6
about the recombination
#30
zhaoxvwahaha
closed
5 years ago
1
How can I get accurate P.value
#29
zhaoxvwahaha
closed
5 years ago
2
about the p-values
#28
zhaoxvwahaha
closed
5 years ago
0
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