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Hi @linnabrown , @yinlabniu , @AaronAOliver
Thank you for a great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction. My o…
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### Setup
python: 3.10.0 (default, Nov 10 2021, 11:24:47) [Clang 12.0.0 ]
implementation: CPython
platform: macOS-10.16-x86_64-i386-64bit
BioPython version: 1.78 (bug also appears in 1.79)
### …
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@tnrich, I created this ticket to support its sister ticket in HDE: https://github.com/TeselaGen/hde/issues/954
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**Visualizing functional vs. physical elements**
Functional elements (shown wi…
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**Use case:**
I want to use a bacterial genome as a custom reference genome. Loading and formatting it correctly involves several steps. If any part of the format is wrong, tools will fail. Notably,…
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https://bactopia.github.io/tutorial/
I'm working through the tutorial.
```
# https://bactopia.github.io/tutorial/#build-datasets
bactopia datasets --ariba "vfdb_core,card" --species "Staphyloc…
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Hi, loving the package. Really crisp plots.
There are a few questions i have.
Im hoping you know of a way to draw exons with the intron line linking them using your package?
Is there a way to…
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Hi @cschlaffner :
Can you explain in details why we can not do the mapping to taxonomies like _Yeast_ or _E.coli_. This issue can be used to trigger the discussion with **ENSEMBL** and explain the…
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#27
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In ModelUsage.py you have the following comment.
> Basic Information
>
> Sequence length constraints
>
> The 3' model expects an input sequence which is 300bp long (stop codon + 297). It will h…
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Hello, thank for this tool. I would like to report what I think is a bug. Honestly, I am not sure if I am using in right way the tool or maybe is in fact a bug.
I work with Nanopore data to ident…