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Hello, I apologize for the disturbance. Thank you for creating such excellent software. However, while using TEsorter, I found that it only annotates parts of proteins within domains. If I want to obt…
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Using it to pull sequence lengths, noticed 2 of my acession codes resulted in wrong seq lengths (Q14749 and P51580). When I used GetSequence it mangages to pull the right seq lengths.
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To ensure protein positivity (i.e. $p > 0$), you must check positivity for $f$.
Indeed, $p = \mu \rho f \odot \tau(f)$ (see Dourado et al. 2023).
In all your models, reactions are irreversible and ne…
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When I was studying Protein Deep Learning, I encountered a new problem. When I ran to this part
information = {}
count = 1
failures=[]
for code,tm,numr,wt_val,mut_val in zip(codes,tms,resnum,wt,…
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Hi, guys:
I have two fundamental question on colocalization.
1. Below is the **Figure 1** of the original coloc paper. So, only P-value is considered for the bayesian test, not BETA and Varia…
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We need to do some symmetry operations on the asymmetric unit. An asymmetric unit is the smallest unique set of atomic coordinates needed to describe the repeating unit of a crystal. If we have a het…
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Dear Vadim,
I am currently looking into how to work with the report.parquet file generated by DIANN, specifically at this point I want to aggregate (or rather filter) the output to the protein leve…
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This replaces #29098
The following BPs represent MFs:
GO:0015680 protein maturation by copper ion transfer
GO:0097428 protein maturation by iron-sulfur cluster transfer
GO:0110147 protein mat…
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The list_init API response depends CSV files "generated/misc/list_init_categories.csv" and "generated/misc/list_init_fields.csv" I have initiated that you will start maintain. Please update those file…
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The inferred results of the Diffdock-PP model provide information solely about the positions of the C-alpha atoms in the protein backbone. Could you please provide me with detailed information on how …