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The adapter provides following as node and edge data:
- Edge type: protein-protein interaction
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Which module is this Interactions class dependent on?
`interactions = Interactions()`
http://www.bahargroup.org/prody/tutorials/insty_tutorial/insty_tutorial.pdf
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Hi,
I have recently installed the get contacts to compute the intermolecular interaction in my system. I have a protein system with 100 chain and I tried to run the get contacts and got the output. …
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Dear Omnipath team,
I would like to know if it is currently possible to access all data in Omnipath using the Cytoscape plugin?
Or will it miss certain interactions when compared to OmnipathR and py…
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How do we incorporate all these elements into our "prior":
i) Expression from GTex (tissue specific, gene, transcript and exon abudances)
ii) Pathway from REACTOME, KEGG, BIOCARTA, etc.
iii) …
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Hi
please could someone explain the difference between these two terms and then improve the definitions so that it is easier to choose which one to use:
GO:0140318 protein transporter activity
Mo…
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#### Current behavior:
31 genes are discovered to be uncorrelated with their corresponding reactions in `Bile acid biosynthesis`/`Bile acid recycling`
| Gene | UniProtID | Reaction | GPR | C…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Protein profile assumes a single protein for a single species. Sites such as Guide to Pharmacology focus more on the interaction rather than the protein. Thus their page on [A1 Receptor](https://www.…
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If I search FlyMine for `kinase*`, I get these types:
```
Hits by Category
Protein: 69247
Gene: 30928
Publication: 9302
Uniprot Feature: 2188
Protein Domain: 1502
Interaction Experiment: 1222
GO Term…