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Hello everyone,
I'm reaching out to see if anyone knows how to visualize both protein and ligand interactions. Currently, I've managed to implement two methods for visualizing them in embedded HTML…
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* **Guidelines**
See http://wiki.geneontology.org/index.php/Guidelines_for_GO_textual_definitions#Use_genus-differentia_patterns_for_definitions
More details at https://douroucouli.wordpress.com/201…
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Hello
I used the easy-search function against the AlphaFold database with the exhaustive search metrics and I noticed my results were greatly conflated where I would have the same protein ID hit mult…
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My favorite instance of the Mol* viewer is the one on the PDB website. See example: https://www.rcsb.org/3d-sequence/1NQ2
I think we may want a similar design as this.
Some docs: https://www.rcsb.or…
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A generally applicable allowed structure generator could be constructed to streamline code and remove duplicate sections, as well as prevent unnecessary calculations of illegal protein structures. It …
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The conservation pipeline falls down when it runs on modified amino acids. Currently, DODO cannot process modified amino acids. Although the .pdbqt is generated and the docking is done, for the conser…
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Both published yesterday:
Alphafold paper: https://www.nature.com/articles/s41586-021-03819-2
David Baker's paper: https://science.sciencemag.org/content/early/2021/07/14/science.abj8754
I gues…
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We need a set of instructions for reviewers of submitted inputs
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Hey!
First of all thank you very much for providing MutateX and also RosettaDDG prediction! I am using RosettaDDG prediction to refine upon my predictions from MutateX and i want to use MutateX for p…
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Pose a question about one of the following articles:
“[Human-level control through deep reinforcement learning](https://www.nature.com/articles/nature14236)” 2015. V. Mnih...D. Hassabis. Nature 51…