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Hi, I have a question about the feature mass determination in ProMex.
According to my understanding to the Informed-Proteomics publication,
(Park, J., Piehowski, P. D., Wilkins, C., Zhou, M., Mend…
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In branch:
https://github.com/geneontology/go-shapes/tree/dustine32-test-has_input
I have this [gocamgen-generated](https://github.com/geneontology/gocamgen) test [TTL file](https://github.com/gen…
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Some ambiguous families seem to have connections that are likely spurious mass differences that happened to fall within peaks. The problem of selecting edges to remove from families is different and s…
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I am currently trying to create some customized XICs which would need the retention time and intensities of all the precursors in all the PrSM. Is there any way to batch export these data? I know I ca…
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@hattrill
have you come across this?
4 entries for the same gene product, EXP annotation look identical?
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It occurs to me that the reported mass of the proteoforms are always ~9Da less than the mass calculated from the reported m/z and z.
In my knowledge, as I am using nESI as the ion source, the mass …
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Was checking out
```
animeshs@DMED7596:/mnt/c/Users/animeshs/Desktop/Documents/Spritz0.0.19$ ./CMD.exe -c proteins
```
but facing the issue:
```
Unhandled Exception: System.IO.FileNotFoundExce…
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Everything currently depends on having access to the subclass closure linking instance nodes in the input models to the root classes defined in the shapemap file. These must be added to the RDF prior…
goodb updated
4 years ago
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- It would be nice to have a "Raw components assigned to this proteoform" column somewhere towards the end of the analysis (for identified, unidentified, orphan proteoforms)
- In the "Proteoform Fami…
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Look back into the Protein entries generated from the UniProt XML to check whether the PTM sets of identified proteoforms are possible, given the database, or whether they represent additional PTMs.