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Hi, I have the same problem I need to use diveRsity for calculate Fst . I worked with a file that I converted to " genepop" in PDGspider I use Test_dato for run but when I used my file It doesn`t run…
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Hi,
Recently i tested Mian for my data. A few things which I think might be very helpful and if possible can be integrated into future versions:
1. Regarding data processing: Currently, Mian has su…
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Hi, I've never left a comment on GitHub before so I hope I'm doing this properly.
I'm running SourceTracker2 on a MacBook. I've previously installed SourceTracker2 into a dedicated virtual environm…
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Hi,
I have recently installed the 1.42.0 version of phyloseq and I am trying to get rarefaction curves for my datasets. However, till I am using this version when I try for example:
`data("Globa…
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Hi all,
I have a question, that probably is a bit silly, so sorry for this.
When I apply the rarefy_even_depth function, many samples are removed from my dataset. I'm working with relative abund…
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Normally happening during the metric step without rarefaction, temporary workaround is to remove the | exit_on_error on the alpha-significance check, that will skip the QZV generation. It's however no…
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Hi there,
I am trying to analyze my orthofinder output data with kinfin, I have encountered the following problem:
```
[STATUS] - Parsing /home/bmb/pecanGenome/orthofinder/kinfin/Orthogroups.txt ..…
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Related to #3102
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Early in development we discussed the option of allowing presence absence data and we build that into the generation of a the input object but we didn't pursue this idea much beyond that. Assuming tha…
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Hi,
I do not fully understand the output from running sourcetracker with the --per_sink_feature_assignments flag and am wondering if anyone can explain the results of the feature_tables that are out…