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NRCan
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Q2Pipe
Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data
MIT License
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Added TMPDIR fallback to /tmp + apptainer temp dir check for all step…
#22
Patg13
closed
6 months ago
0
Temporary folder definition causing errors when using Apptainer
#21
Patg13
opened
9 months ago
0
Qiime2 2023 9 upgrade
#20
Patg13
closed
11 months ago
0
Classifier NB_THREAD option standalone
#19
Patg13
closed
11 months ago
1
Need to upgrade Qiime2 importation format
#18
Patg13
opened
1 year ago
0
Step10 now multithreaded (already tested, 10-fold speed gain)
#17
Patg13
closed
1 year ago
0
Falco screening
#16
Patg13
closed
1 year ago
0
Make step 10 (metrics generation) faster by multithreading
#15
Patg13
closed
11 months ago
1
Pielou_e sometime crash with division by zero error
#14
Patg13
opened
1 year ago
2
Workflow Test infrastructure needed in case of Qiime2 update
#13
Patg13
opened
1 year ago
0
Code review needed for Step 1 and 2
#12
Patg13
opened
1 year ago
0
Allow an analysis without providing a metadata file
#11
Patg13
opened
1 year ago
0
Need a checkup system in step 1 for matching metadata and manifest
#10
Patg13
opened
1 year ago
0
Need a better script to update optionfiles
#9
Patg13
opened
1 year ago
0
Figaro Division by Zero crash
#8
Patg13
opened
1 year ago
0
Include a run information file during step 1 ?
#7
Patg13
opened
1 year ago
0
Rarefaction processing upgrade
#6
Patg13
opened
1 year ago
0
Improve trimming parameter testing
#5
Patg13
opened
1 year ago
0
Develop an official Qiime2 plugin for Figaro
#4
Patg13
opened
1 year ago
0
Add fastqc/falco to the importation step
#3
Patg13
closed
1 year ago
1
Prepare for figaro2
#2
Patg13
opened
1 year ago
0
Wsl dev
#1
Patg13
closed
1 year ago
0