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- it's painfully slow to generate all images for some structures, [4v99](https://www.rcsb.org/structure/4v99) took almost 24 h, 3j3q and most ribosomes are fine however (which is why I didn't spot thi…
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Hi there,
I am trying to run ribotish on regular riboseq data from our lab.
Unfortunately, this already fails at the quality step. I mapped the reads to their reference (GRCm39) with a special ann…
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András Hatos from DisProt and PED database noticed few missing connections and misspelled terms.
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I am András Hatos the developer of DisPro…
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Hello, I check my samples coverage and density files after **RiboDensityAtEachPosition** step, I found that most protein-coding genes are 0, is it normal? Besides the **periodicity** of my reads is …
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Tickets labelled R2.2:
* [open](https://github.com/riboviz/RiboViz/labels/R2.2)
* [closed](https://github.com/riboviz/RiboViz/issues?q=label%3AR2.2+is%3Aclosed)
* [all](https://github.com/riboviz…
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Hi, I have met the following problem (see the error code) while running the software. Can you help me out? Thanks!
This is the error code:
![image](https://user-images.githubusercontent.com/97614616…
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See https://doi.org/10.1016/j.molcel.2018.11.026.
Thanks for starting to add a new dataset to example-datasets! This issue template includes the key steps, see [add-new-dataset.md](https://github.c…
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Add Rubio et al 2020 **Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast** as a new S. pombe example dataset. This paper i…
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Hi,
I am having some troubles running the Makefit.R script on my RNA seq samples. I have 75 bp reads and when I used the the standard length filter preset in the config.yaml it would not create any…
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1. You describe a "base" variable, and I presume this is the variable whose coefficient is tested, but I don't see you state which coefficient you actually test, which would be especially helpful for …