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### Background
[OpenVectorEditor](https://github.com/TeselaGen/openVectorEditor) is a free and open tool for sequence visualization and editing. It does not yet support SBOL, however, making it hard …
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After adding part, bring up editor immediately.
Use the SBO term for the species to set the type of the generic CD generated. If no SBO term, then Species should be Protein and Promoter should be …
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Currently, annotating iBioSim components with an SBOL component will replace iBioSim icon with a transcriptional unit icon. It would be nice if we support SBOL visual 2.0 icons instead. An example of …
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Running in a Colab notebook, most tests worked, but one failed:
>sbol.testSBOL()
======================================================================
ERROR: testCopyAndIncrementVersion (sbol.un…
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As a Python programmer, having to manage the SBOL documents makes my task more complex.
In using SBOL I have had to think about these independent tasks:
1. constructing the aggregate objects for…
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The current implementation of the SBOL/Genbank converter in sbol3_genbank_conversion.py uses a custom class `Location_GenBank_Extension` to represent GenBank's fuzzy location field.
Unfortunately, …
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I'm not really a fan of us hijacking the `rdfs:label` property -- which is meant to be a human-readable name -- for the purposes of making a python-name.
Thinking of how we might do this without di…
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In the final output, SBOL-Utilities' code adds an additional /1 to the wasDerivedFrom tag when the dataSource column is a link: "https://synbiohub.programmingbiology.org/public/Eco1C1G1T1". The curren…
wdrav updated
10 months ago
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When converted to SBOL format, some parts are annotated with a subcomponent that has the same URI. For example, BBa_R0040 has the URI http://partsregistry.org/part/BBa_R0040 and is annotated with a s…
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**Context**
I am trying to create/use an automated design tool that will take the SBOL file of the desired construct and create an optimal way of assembling it using the MoClo standard.
After play…