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I'm on day 3 of a gather of the Hu S1 dataset against all genbank (500k+ genomes), and chatting with @taylorreiter about the find-the-unassigned script that @luizirber wrote,
https://github.com/ta…
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it's not easy to find!
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Dear FracMinHash team,
I am wondering the scaled sketch approach in FracMinHash is a metric operation, meaning, is FracMinHash (A, B) the same with FracMinHash (B, A), or FracMinHash (A, B) + FracM…
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Hello,
My idea is to find group-specific hashes from a set of MAG signatures and create a "panhashome" - one signature representing the whole group. If I have two groups, each output signature would …
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Seems that at some point sourmash newer version requires an updated LCA database, I got failure with v4.2.2 and the one we have pinned in resources.py. New link is https://osf.io/9xdg2/download and p…
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sourmash version 4.6.1
```
./scripts/make-db-cover.py genbank-2022.03-fungi-k31.zip -o genbank-2022.03-fungi-k31-scaled1k-cover.zip --scaled 1000
```
returns:
```
examining GCA_022578855.1 …
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Roughly this is the idea: using a set of sequences (e.g. training set or generated set) we write first them in a temporary fasta file, using the obtained file (e.g. sequences.fa) call the kat hist fun…
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I just ran the command `sourmash sig split --output DATA/split_sigs_filtered/` without checking help documentation and it worked! However the help message only claims that `--output-dir` or `--outdir…
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I have a protein signature:
```
$ sourmash sig fileinfo kegg_genes_KO_1000.faa_scale_1.db.zip
== This is sourmash version 4.4.3. ==
== Please cite Brown and Irber (2016), doi:10.21105/joss.00027…