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I have reviewed the tutorial to integrate scRNA-seq and scATAC-seq data (https://satijalab.org/seurat/articles/seurat5_atacseq_integration_vignette). If I have multiple conditions, do I integrate all …
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Hi,
I wonder know if GLUE can generate cross modality data, like you have a pre-trained model, and if you can generate scATAC-seq data using the scRNA-seq data?
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Hello,nice work!
Can you public your processing code of scATAC-seq using ArchR in this paper for learning? Or how you convert your seurat object in signac to ArchR object?
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When I ran the tutorial of [Regulatory network analysis through intergrating scRNA-seq data and scATAC-seq data](https://jiang-junyao.github.io/IReNA/scATAC+scRNA), I can't found the file named P1_CM_…
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Hi Dr. Zhang,
I read your Polarbear paper and planned to run the model on some multiomics data for the Human Brain to see how well your model performs on human brain tissue. Do you have a pretraine…
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Hi!
I have a sample (no labeling) of stem cell differentiation data in both scRNA-seq and scATAC-seq, but I only have one BAM file from 10x. Just wanna make sure that your method could be applied to …
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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
grst updated
3 months ago
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Hi @huangyh09,
First of all, huge thanks for developing Vireo!
I've been testing it using a synthetic pool (3 donors), and I've noticed a high number of unassigned cells, particularly from one don…
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**User story**
User is a biologist and has a dataset they want to visualize. We should point them directly to an example and the relevant documentation pages.
**Preferred solution**
We should…
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Hi Cutadapt team,
This is not a standard "issue" but an inquiry regarding sn/scATAC-seq data preprocessing (10x Genomics multiome). I'm using Cutadapt to trim snATAC-seq data reads before alignment…